The setting in the different Alice and Wonderland are very,well, different. The Tim Burton version includes settings that aren't in the cartoon version such as the queens throne room and the white queens castle. Also the begin settings were different with the cartoon version starting in the woods, while the other version started in a house in London and the countryside mansion. The checkboxes battlefield is also not in the cartoon version.
They also have some similar settings such as the forest and room with doors in wonderland. Also the red queens garden is the same.
Although the setting of the new version was odd, I like it better than the cartoon settings.